The Global Catalogue of Microorganisms 10K type strain sequencing project: closing the genomic gaps for the validly published prokaryotic and fungi species

L Wu; Kevin McCluskey; Philippe Desmeth; Shuangjiang Liu; Sugawara Hideaki; Ye Yin; Ohkuma Moriya; Takashi Itoh; Cha Young Kim; Jung-Sook Lee; Yuguang Zhou; Hiroko Kawasaki; Manzour Hernando Hazbón; Vincent Robert; Teun Boekhout; Nelson Lima; Lyudmila Evtushenko; Kyria Boundy-Mills; Boyke Bunk; Edward R B Moore; Lily Eurwilaichitr; Supawadee Ingsriswang; Heena Shah; Su Yao; Tao Jin; Jinqun Huang; Wenyu Shi; Qinglan Sun; Guomei Fan; Wei Li; Xian Li; D Ipek Kurtboke; Juncai Ma

doi:10.1093/gigascience/giy026

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The Global Catalogue of Microorganisms 10K type strain sequencing project: closing the genomic gaps for the validly published prokaryotic and fungi species

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The Global Catalogue of Microorganisms 10K type strain sequencing project: closing the genomic gaps for the validly published prokaryotic and fungi species

L Wu, Kevin McCluskey, Philippe Desmeth, Shuangjiang Liu, Sugawara Hideaki, Ye Yin, Ohkuma Moriya, Takashi Itoh, Cha Young Kim, Jung-Sook Lee, …

GigaScience, Vol.7(5)

2018

DOI: https://doi.org/10.1093/gigascience/giy026

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Abstract

Genomic information is essential for taxonomic, phylogenetic and functional studies to comprehensively decipher the characteristics of microorganisms, to explore microbiomes through metagenomics, and to answer fundamental questions of nature and human life. However, large gaps remain in the available genomic sequencing information published for bacterial and archaeal species, and the gaps are even larger for fungal type strains. The Global Catalogue of Microorganisms (GCM) leads an internationally coordinated effort to sequence type strains and close gaps in the genomic maps of microbes. Hence, the GCM aims to promote research by deep-mining genomic data.

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Title: The Global Catalogue of Microorganisms 10K type strain sequencing project: closing the genomic gaps for the validly published prokaryotic and fungi species
Authors: L Wu (Author) - Chinese Academy of Sciences, China
Kevin McCluskey (Author) - Kansas State University, United States
Philippe Desmeth (Author) - Belgian Science Policy Office, Belgium
Shuangjiang Liu (Author) - Chinese Academy of Sciences, China
Sugawara Hideaki (Author) - National Institute of Genetics, Japan
Ye Yin (Author) - BGI Genomics, China
Ohkuma Moriya (Author) - RIKEN BioResource Center, Japan
Takashi Itoh (Author) - RIKEN BioResource Center, Japan
Cha Young Kim (Author) - Korea Research Institute of Bioscience and Biotechnology (KRIBB), Republic of Korea
Jung-Sook Lee (Author) - Korea Research Institute of Bioscience and Biotechnology (KRIBB), Republic of Korea
Yuguang Zhou (Author) - Chinese Academy of Sciences, China
Hiroko Kawasaki (Author) - National Institute of Technology and Evaluation, Japan
Manzour Hernando Hazbón (Author) - University Boulevard, United States
Vincent Robert (Author) - Westerdijk Fungal Biodiversity Institute, Netherlands
Teun Boekhout (Author) - Westerdijk Fungal Biodiversity Institue, Netherlands
Nelson Lima (Author) - Micoteca da Universidade do Minho, Portugal
Lyudmila Evtushenko (Author) - GK Skryabin Institute of Biochemistry and Physiology of Microorganisms RAS, Russia
Kyria Boundy-Mills (Author) - University of California Davis, United States
Boyke Bunk (Author) - Leibniz-Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Germany
Edward R B Moore (Author) - Sahlgrenska Academy of the University of Gothenburg, Sweden
Lily Eurwilaichitr (Author) - Bangkok National Science and Technology Development Agency, Thailand
Supawadee Ingsriswang (Author) - Bangkok National Science and Technology Development Agency, Thailand
Heena Shah (Author) - National Collection of Type Cultures
Su Yao (Author) - China Center of Industrial Culture Collection, China
Tao Jin (Author) - BGI Genomics, China
Jinqun Huang (Author) - BGI Genomics, China
Wenyu Shi (Author) - Chinese Academy of Sciences, China
Qinglan Sun (Author) - Chinese Academy of Sciences, China
Guomei Fan (Author) - Chinese Academy of Sciences, China
Wei Li (Author) - Chinese Academy of Sciences, China
Xian Li (Author) - Chinese Academy of Sciences, China
D Ipek Kurtboke (Author) - University of the Sunshine Coast - Faculty of Science, Health, Education and Engineering
Juncai Ma (Author) - Chinese Academy of Sciences, China
Publication details: GigaScience, Vol.7(5); 4
Publisher: BioMed Central Ltd.
Date published: 2018
DOI: 10.1093/gigascience/giy026
ISSN: 2047-217X
Copyright note: Copyright © The Author(s) 2018. Published by Oxford University Press. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
Organisation Unit: School of Science and Engineering - Legacy; University of the Sunshine Coast, Queensland; GeneCology Research Centre - Legacy; School of Science, Technology and Engineering; Centre for Bioinnovation
Language: English
Record Identifier: 99451401402621
Output Type: Journal article

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