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Hierarchy of DNA immobilization and hybridization on poly-L-lysine using an atomic force microscopy study
Journal article   Peer reviewed

Hierarchy of DNA immobilization and hybridization on poly-L-lysine using an atomic force microscopy study

P D Sawant, Gregory S Watson, D Nicolau Jr, S Myhra and D V Nicolau
Journal of Nanoscience and Nanotechnology, Vol.5(6), pp.951-957
2005
url
https://doi.org/10.1166/jnn.2005.125View
Published Version

Abstract

atomic force microscopy DNA hybridization immobilization nanodefects poly-l-lysine
The atomic force microscopy has been used to analyze the immobilization of single stranded DNA on poly-L-lysine-coated glass and subsequent hybridization with complimentary DNA with the Z-threshold parameter and fractal analysis methods. The poly-L-lysine layer, which has a thickness of approximately 7 nm, presents nano-defects that could be critical for DNA immobilization by acting as a nucleation sites for ssDNA and subsequently for dsDNA aggregates. The Z-threshold for the dsDNA aggregates is much larger than for ssDNA, but the statistical fractal dimension is very similar, suggesting a conformal increase of the dimensions of the dsDNA aggregates mainly in the Z-direction, due to an effective ssDNA-ccDNA molecular recognition. This study demonstrates the use of fractal analysis in conjunction with the distribution of heights to evaluate the efficiency of DNA-DNA molecular recognition on surfaces and the impact of nanodefects. Copyright © 2005 American Scientific Publishers All rights reserved.

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Domestic collaboration
Web Of Science research areas
Chemistry, Multidisciplinary
Materials Science, Multidisciplinary
Nanoscience & Nanotechnology
Physics, Applied
Physics, Condensed Matter

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