CIDB: Chlamydia Interactive Database for cross-querying genomics, transcriptomics and proteomics data

Yan Chen; Peter Timms; Yi-Ping Phoebe Chen

doi:10.1016/j.bioeng.2007.08.017

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CIDB: Chlamydia Interactive Database for cross-querying genomics, transcriptomics and proteomics data

Journal article

Peer reviewed

CIDB: Chlamydia Interactive Database for cross-querying genomics, transcriptomics and proteomics data

Yan Chen, Peter Timms and Yi-Ping Phoebe Chen

Biomolecular Engineering, Vol.24(6), pp.603-608

2007

DOI: https://doi.org/10.1016/j.bioeng.2007.08.017

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Abstract

transcriptomics

proteomics chlamydia data

Chlamydiae are important pathogens of humans, birds and a wide range of animals. They are a unique group of bacteria, characterized by their developmental cycle. Chlamydia has been difficult to study because of their obligate intracellular growth habit and lack of a genetic transformation system. However, the past 5 years has seen the full genome sequencing of seven strains of Chlamydia and a rapid expansion of genomic, transcriptomic (RT-PCR, microarray) and proteomic analysis of these pathogens. The Chlamydia Interactive Database (CIDB) described here is the first database of its type that holds genomic, RT-PCR, microarray and proteomics data sets that can be cross-queried by researchers for patterns in the data. Combining the data of many research groups into a single database and cross-querying from different perspectives should enhance our understanding of the complex cell biology of these pathogens. The database is available at: http://www3.it.deakin.edu.au:8080/CIDB/. © 2007 Elsevier B.V. All rights reserved.

Details

Title: CIDB: Chlamydia Interactive Database for cross-querying genomics, transcriptomics and proteomics data
Authors: Yan Chen (Author) - Deakin University
Peter Timms (Author) - Queensland University of Technology
Yi-Ping Phoebe Chen (Author) - Deakin University
Publication details: Biomolecular Engineering, Vol.24(6), pp.603-608
Publisher: Elsevier BV
Date published: 2007
DOI: 10.1016/j.bioeng.2007.08.017
ISSN: 1389-0344
Organisation Unit: University of the Sunshine Coast, Queensland; Centre for Bioinnovation
Language: English
Record Identifier: 99449903002621
Output Type: Journal article

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Web Of Science research areas: Biochemical Research Methods; Biotechnology & Applied Microbiology; Genetics & Heredity

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