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READMECC BY V4.0, Open Access
DataCC BY V4.0, Open Access
Dataset
Asparagopsis taxiformis Lineage 6 Genome
University of the Sunshine Coast
2022
DOI:
https://doi.org/10.25907/00708
Appears in UniSC Research Data Collection
Abstract
The red seaweed Asparagopsis taxiformis (Bonnemaisoniaceae, Rhodophyta) produces bioactive natural products that, when fed to cattle and sheep, reduces methane emissions. In this dataset, we present the first draft genome for A. taxiformis Lineage 6. This is the specific lineage upon which the original discovery work on methane reduction was conducted (WO2015109362A2 - Method for reducing total gas production and/or methane production in a ruminant animal); a lineage that is native to Queensland, Australia. The genome has a size of 142 Mb and contains 70.67% repeat regions and approximately 10,867 protein-coding genes, including those associated with secondary metabolism, photosynthesis and defence. In brief, the filamentous diploid stage (sporophyte) of Asparagopsis taxiformis Lineage 6 was used for genome sequencing. The sample was originally collected from Moffat Beach, Sunshine Coast (30/07/2019) and maintained in sterile seawater culture prior to sequencing. A hybrid sequencing strategy was used, combining long reads from PacBio sequencing and short reads from BGI DNBSeq sequencing. The genome assembly is provided in Fasta format (plain text).
Details
- Title
- Asparagopsis taxiformis Lineage 6 Genome
- Authors
- Min Zhao (Data Collector) - University of the Sunshine Coast, Queensland, School of Science, Technology and EngineeringAlexandra Campbell (Data Collector) - University of the Sunshine Coast, Queensland, School of Health and Behavioural Sciences - LegacyZubaida Parveen Patwary (Data Collector) - University of the Sunshine Coast, Queensland, School of Science, Technology and EngineeringTianfang Wang (Data Collector) - University of the Sunshine Coast, Queensland, School of Science, Technology and EngineeringJessica Webb (Data Collector) - University of the Sunshine Coast, Queensland, School of Science, Technology and EngineeringGiuseppe C Zuccarello (Data Collector) - Victoria University of WellingtonAna Wegner (Data Collector) - University of the Sunshine Coast, Queensland, School of Science, Technology and EngineeringDavid Heyne (Data Collector) - University of the Sunshine Coast, Queensland, School of Science, Technology and EngineeringLachlan McKinnie (Data Collector) - University of the Sunshine Coast, Queensland, School of Science, Technology and EngineeringCecilia Pascelli (Data Collector) - University of the Sunshine Coast, Queensland, School of Science, Technology and EngineeringNori Satoh (Data Collector) - Okinawa Institute of Science and TechnologyEiichi Shoguchi (Data Collector) - Okinawa Institute of Science and TechnologyNick Paul (Data Collector) - University of the Sunshine Coast, Queensland, School of Science, Technology and EngineeringScott Cummins (Data Collector) - University of the Sunshine Coast, Queensland, School of Science, Technology and Engineering
- Format
- 1 FASTA file, 1 text file; 138 MB
- Location
- Moffat Beach, Sunshine Coast, QLD 4551, Australia
- Publisher
- University of the Sunshine Coast
- Date collected
- 23-Aug-2021
- Date published
- 2022
- DOI
- 10.25907/00708
- Copyright note
- This work is licensed under a Creative Commons Attribution 4.0 License which allows users to read, copy, distribute and make derivative works for non-commercial purposes from the material, as long as the author of the original work is cited properly.
- Organisation Unit
- School of Health - Biomedicine; University of the Sunshine Coast, Queensland; Cancer Research Cluster; School of Science, Technology and Engineering; Centre for Bioinnovation; School of Health and Behavioural Sciences - Legacy
- Language
- English
- Record Identifier
- 99681596502621
- Output Type
- Dataset
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