Multi-omics investigations within the Phylum Mollusca, Class Gastropoda: from ecological application to breakthrough phylogenomic studies

Anne H Klein; Kaylene R Ballard; Kenneth B Storey; Cherie A Motti; Min Zhao; Scott F Cummins

doi:10.1093/bfgp/elz017

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Multi-omics investigations within the Phylum Mollusca, Class Gastropoda: from ecological application to breakthrough phylogenomic studies

Journal article

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Multi-omics investigations within the Phylum Mollusca, Class Gastropoda: from ecological application to breakthrough phylogenomic studies

Anne H Klein, Kaylene R Ballard, Kenneth B Storey, Cherie A Motti, Min Zhao and Scott F Cummins

Briefings in Functional Genomics, Vol.18(6), pp.377-394

2019

DOI: https://doi.org/10.1093/bfgp/elz017

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Abstract

genomics

proteomics

gastropod

health

ecology

biomineralization

aquaculture

Gastropods are the largest and most diverse class of mollusc and include species that are well studied within the areas of taxonomy, aquaculture, biomineralization, ecology, microbiome and health. Gastropod research has been expanding since the mid-2000s, largely due to large-scale data integration from next-generation sequencing and mass spectrometry in which transcripts, proteins and metabolites can be readily explored systematically. Correspondingly, the huge data added a great deal of complexity for data organization, visualization and interpretation. Here, we reviewed the recent advances involving gastropod omics ('gastropodomics') research from hundreds of publications and online genomics databases. By summarizing the current publicly available data, we present an insight for the design of useful data integrating tools and strategies for comparative omics studies in the future. Additionally, we discuss the future of omics applications in aquaculture, natural pharmaceutical biodiscovery and pest management, as well as to monitor the impact of environmental stressors.

Details

Title: Multi-omics investigations within the Phylum Mollusca, Class Gastropoda: from ecological application to breakthrough phylogenomic studies
Authors: Anne H Klein (Author) - University of the Sunshine Coast, Queensland, GeneCology Research Centre - Legacy
Kaylene R Ballard (Author) - University of the Sunshine Coast, Queensland, GeneCology Research Centre - Legacy
Kenneth B Storey (Author) - Carleton University, Canada
Cherie A Motti (Author) - Australian Institute of Marine Science
Min Zhao (Corresponding Author) - University of the Sunshine Coast, Queensland, GeneCology Research Centre - Legacy
Scott F Cummins (Corresponding Author) - University of the Sunshine Coast, Queensland, GeneCology Research Centre - Legacy
Publication details: Briefings in Functional Genomics, Vol.18(6), pp.377-394
Publisher: Oxford University Press
DOI: 10.1093/bfgp/elz017
ISSN: 2041-2649
Organisation Unit: Centre for Bioinnovation; School of Science and Engineering - Legacy; School of Science, Technology and Engineering; University of the Sunshine Coast, Queensland
Language: English
Record Identifier: 99450992202621
Output Type: Journal article

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Web Of Science research areas: Biotechnology & Applied Microbiology; Genetics & Heredity

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